Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'4-3-Internal Loop pdb2vhoFA.n678-704
Source: [PDB-id:chain] 2vho:A (&rarr PDB)
Source: Information STRUCTURE OF PDF BINDING HELIX IN COMPLEX WITH THE RIBOSOME (PART 3 OF 4)
Source: Compound 16S RIBOSOMAL RNA
FLIPPED INTERNAL
Source: Resolution 3.74 ANGSTROMS.
Position (674, 709), (678, 704)
Primary structure ('_': anchors) _UGGA_-_CCA_
Bases with unusual sugar puckers
(Standard: C3'-endo)
2: C1'-endo, 3: C2'-exo, 5: C4'-exo, 6: C4'-exo, 7: C2'-exo, 8: C2'-exo, 9: C1'-endo, 11: C1'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2
2 2 3
3 3 4
4 4 5
5 4 8
6 5 6
7 7 8
8 10 11
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 11 Watson-Crick/Watson-Crick cis y
2 2 10 Watson-Crick/Watson-Crick cis
3 4 9 Watson-Crick/Watson-Crick cis
4 6 7 Watson-Crick/Watson-Crick cis
5 10 11 Hoogsteen/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters