Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'4-5-Internal Loop pdb2vhoFA.n62-99
Source: [PDB-id:chain] 2vho:A (&rarr PDB)
Source: Information STRUCTURE OF PDF BINDING HELIX IN COMPLEX WITH THE RIBOSOME (PART 3 OF 4)
Source: Compound 16S RIBOSOMAL RNA
FLIPPED INTERNAL
Source: Resolution 3.74 ANGSTROMS.
Position (63, 98), (69, 93)
Primary structure ('_': anchors) _ACGA_-_GGUAA_
Bases with unusual sugar puckers
(Standard: C3'-endo)
5: C2'-exo, 6: C2'-exo, 8: C2'-exo, 9: C3'-exo, 10: C2'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
9: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2
2 1 12
3 2 3
4 3 9
5 4 5
6 5 6
7 7 8
8 8 9
9 10 11
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 13 Watson-Crick/Watson-Crick cis
2 2 12 Watson-Crick/Watson-Crick cis
3 4 8 O2'/Watson-Crick ?
4 4 9 Bifurcated/Bifurcated cis y
5 4 11 Watson-Crick/Watson-Crick cis
6 6 7 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters