Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'6-7-Internal Loop pdb2vhoFA.n1423-1469
Source: [PDB-id:chain] 2vho:A (&rarr PDB)
Source: Information STRUCTURE OF PDF BINDING HELIX IN COMPLEX WITH THE RIBOSOME (PART 3 OF 4)
Source: Compound 16S RIBOSOMAL RNA
FLIPPED INTERNAL
Source: Resolution 3.74 ANGSTROMS.
Position (1424, 1468), (1432, 1461)
Primary structure ('_': anchors) _CCACUU_-_AAAGAAG_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		1: O4'-exo, 2: C2'-exo, 5: C4'-exo, 6: C2'-exo, 8: C2'-exo, 9: C4'-exo, 13: O4'-exo, 14: C2'-exo, 15: C2'-exo, 16: C2'-exo, 17: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		13: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 2 15 →
3 3 4 ↑
4 4 5 ↑
5 5 12 →
6 9 10 ↑
7 10 11 ↑
8 14 15 ↑
9 15 16 ↑
10 16 17 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 17 Watson-Crick/Watson-Crick cis y
2 3 15 Watson-Crick/Watson-Crick cis
3 6 12 Watson-Crick/Hoogsteen trans y
4 8 9 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters