Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'3-3-Internal Loop pdb2vhoFA.n1254-1273
Source: [PDB-id:chain] 2vho:A (&rarr PDB)
Source: Information STRUCTURE OF PDF BINDING HELIX IN COMPLEX WITH THE RIBOSOME (PART 3 OF 4)
Source: Compound 16S RIBOSOMAL RNA
FLIPPED INTERNAL
Source: Resolution 3.74 ANGSTROMS.
Position (1255, 1272), (1259, 1268)
Primary structure ('_': anchors) _CAA_-_GAC_
Bases with unusual sugar puckers
(Standard: C3'-endo)
1: C2'-exo, 5: C2'-exo, 6: C2'-exo, 8: C4'-exo, 9: C2'-exo, 10: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2
2 2 8
3 3 4
4 4 5
5 6 7
6 7 8
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 10 Watson-Crick/Watson-Crick cis y
2 2 9 Hoogsteen/Sugar trans
3 3 8 O2'/Bifurcated ?
4 4 7 Watson-Crick/Watson-Crick cis y
5 5 6 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters