Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'4-2-Internal Loop pdb2vhoFA.n1249-1280
Source: [PDB-id:chain] 2vho:A (&rarr PDB)
Source: Information STRUCTURE OF PDF BINDING HELIX IN COMPLEX WITH THE RIBOSOME (PART 3 OF 4)
Source: Compound 16S RIBOSOMAL RNA
FLIPPED INTERNAL
Source: Resolution 3.74 ANGSTROMS.
Position (1251, 1278), (1254, 1273)
Primary structure ('_': anchors) _GGAC_-_AA_
Bases with unusual sugar puckers
(Standard: C3'-endo)
2: C4'-endo, 3: C1'-exo, 4: C2'-exo, 5: C4'-endo, 6: C4'-exo, 7: C2'-exo, 8: C2'-endo, 10: C1'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
4: syn, 8: syn, 9: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 4 10 &larr
2 5 6
3 5 9 &larr
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 10 Watson-Crick/Watson-Crick cis y
2 4 6 Sugar/O2' ?
3 5 9 O2'/Watson-Crick ?
4 6 7 Watson-Crick/Watson-Crick cis
5 7 10 C/O2' cis y
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters