Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'4-3-Internal Loop pdb2vhoFA.n1117-1148
Source: [PDB-id:chain] 2vho:A (&rarr PDB)
Source: Information STRUCTURE OF PDF BINDING HELIX IN COMPLEX WITH THE RIBOSOME (PART 3 OF 4)
Source: Compound 16S RIBOSOMAL RNA
FLIPPED INTERNAL
Source: Resolution 3.74 ANGSTROMS.
Position (1120, 1145), (1124, 1140)
Primary structure ('_': anchors) _AACU_-_UUG_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		4: C2'-exo, 5: C2'-endo, 6: O4'-endo, 8: C2'-exo, 9: O4'-endo, 10: C3'-exo, 11: C1'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 3 4 ↑
3 7 8 ↑
4 8 10 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 11 Watson-Crick/Watson-Crick cis
2 2 8 Watson-Crick/Sugar cis y
3 5 11 Watson-Crick/O2' ?
4 6 7 Watson-Crick/Watson-Crick cis y
5 9 10 Hoogsteen/O2' ?
6 10 11 Hoogsteen/Sugar cis y
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters