Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'2-4-Internal Loop pdb2vho1A.n1249-1280
Source: [PDB-id:chain] 2vho:A (&rarr PDB)
Source: Information STRUCTURE OF PDF BINDING HELIX IN COMPLEX WITH THE RIBOSOME (PART 3 OF 4)
Source: Compound 16S RIBOSOMAL RNA
Source: Resolution 3.74 ANGSTROMS.
Position (1251, 1278), (1254, 1273)
Primary structure ('_': anchors) _AA_-_GGAC_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		1: C1'-endo, 3: C2'-endo, 4: C2'-exo, 5: C4'-exo, 6: C4'-endo, 7: C2'-exo, 8: C1'-exo, 9: C4'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		2: syn, 3: syn, 7: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 7 &larr
2 2 6 &larr
3 5 6 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 4 C/O2' cis y
2 1 10 Watson-Crick/Watson-Crick cis y
3 2 6 O2'/Watson-Crick ?
4 4 5 Watson-Crick/Watson-Crick cis
5 5 7 Sugar/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters