Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'8-Segment pdb2vho1A.i1228-1237
Source: [PDB-id:chain] 2vho:A (&rarr PDB)
Source: Information STRUCTURE OF PDF BINDING HELIX IN COMPLEX WITH THE RIBOSOME (PART 3 OF 4)
Source: Compound 16S RIBOSOMAL RNA
Source: Resolution 3.74 ANGSTROMS.
Position (1228, 1237)
Primary structure ('_': anchors) _GCUACAAU_
Bases with unusual sugar puckers
(Standard: C3'-endo)
1: C4'-exo, 3: C2'-exo, 5: C2'-exo, 7: C4'-exo, 8: C1'-exo, 9: C3'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
9: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2
2 2 3
3 3 4
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 7 10 O2'/Sugar ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters