Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'9-Hairpin pdb2vho1A.e782-792
Source: [PDB-id:chain] 2vho:A (&rarr PDB)
Source: Information STRUCTURE OF PDF BINDING HELIX IN COMPLEX WITH THE RIBOSOME (PART 3 OF 4)
Source: Compound 16S RIBOSOMAL RNA
Source: Resolution 3.74 ANGSTROMS.
Position (782, 792)
Primary structure ('_': anchors) _AUUAGAUAC_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		4: C2'-exo, 5: C2'-exo, 6: C4'-exo, 7: C2'-endo, 8: O4'-endo, 9: C2'-exo, 10: C4'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		4: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 2 3 ↑
3 5 6 ↑
4 7 9 ↑
5 9 10 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 11 Watson-Crick/Watson-Crick cis
2 3 10 Watson-Crick/Watson-Crick cis y
3 4 5 Hoogsteen/O2' ?
4 4 7 O2'/Watson-Crick ?
5 7 9 Hoogsteen/O2' ?
6 8 9 Hoogsteen/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters