Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'3-5-Internal Loop pdb2vhn1B.n286-354
Source: [PDB-id:chain] 2vhn:B (&rarr PDB)
Source: Information STRUCTURE OF PDF BINDING HELIX IN COMPLEX WITH THE RIBOSOME. (PART 2 OF 4)
Source: Compound 23S RIBOSOMAL RNA
Source: Resolution 3.74 ANGSTROMS.
Position (291, 349), (295, 343)
Primary structure ('_': anchors) _UUA_-_AAAAA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		2: C2'-exo, 4: C4'-exo, 6: C2'-exo, 7: C4'-exo, 8: C2'-endo, 9: C2'-exo, 10: C1'-endo, 12: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		9: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 4 8 →
3 5 7 →
4 9 10 →
5 10 11 ↑
6 11 12 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 12 Watson-Crick/Watson-Crick cis y
2 5 6 Watson-Crick/Watson-Crick cis
3 6 7 Hoogsteen/Watson-Crick cis y
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters