Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'1-2-Internal Loop pdb2vhn1B.n2064-2187
Source: [PDB-id:chain] 2vhn:B (&rarr PDB)
Source: Information STRUCTURE OF PDF BINDING HELIX IN COMPLEX WITH THE RIBOSOME. (PART 2 OF 4)
Source: Compound 23S RIBOSOMAL RNA
Source: Resolution 3.74 ANGSTROMS.
Position (2065, 2186), (2067, 2183)
Primary structure ('_': anchors) _A_-_GG_
Bases with unusual sugar puckers
(Standard: C3'-endo)
1: C4'-exo, 2: C4'-exo, 6: O4'-endo, 7: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
6: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 2 3
2 4 5
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 7 Watson-Crick/Watson-Crick cis
2 3 4 Watson-Crick/Watson-Crick cis
3 5 7 Hoogsteen/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters