Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'24-Segment pdb2vhn1B.i2317-2342
Source: [PDB-id:chain] 2vhn:B (&rarr PDB)
Source: Information STRUCTURE OF PDF BINDING HELIX IN COMPLEX WITH THE RIBOSOME. (PART 2 OF 4)
Source: Compound 23S RIBOSOMAL RNA
Source: Resolution 3.74 ANGSTROMS.
Position (2317, 2342)
Primary structure ('_': anchors) _GUGCGAAAGCAGGUCAUAGUGAUC_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		3: C2'-exo, 9: C2'-exo, 13: O4'-endo, 14: C2'-exo, 15: C2'-endo, 16: C2'-exo, 19: C4'-exo, 22: C2'-endo, 23: C2'-exo, 24: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 4 5 ↑
3 4 12 →
4 5 6 ↑
5 7 8 ↑
6 8 9 ↑
7 10 11 ↑
8 11 12 ↑
9 17 18 ↑
10 23 24 ↑
11 24 25 ↑
12 25 26 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 5 10 Watson-Crick/Watson-Crick cis
2 6 8 Hoogsteen/O2' ?
3 6 9 O2'/Bifurcated ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters