Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'20-Segment pdb2vhn1B.i1908-1929
Source: [PDB-id:chain] 2vhn:B (&rarr PDB)
Source: Information STRUCTURE OF PDF BINDING HELIX IN COMPLEX WITH THE RIBOSOME. (PART 2 OF 4)
Source: Compound 23S RIBOSOMAL RNA
Source: Resolution 3.74 ANGSTROMS.
Position (1908, 1929)
Primary structure ('_': anchors) _CUAAGGUAGCGAAAUUCCUU_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		1: C2'-exo, 6: C3'-exo, 7: C4'-exo, 10: C2'-exo, 12: C4'-exo, 13: C4'-endo, 14: C3'-exo, 15: C1'-exo, 16: C3'-exo, 17: C3'-exo, 18: C2'-exo, 20: C3'-exo, 21: C3'-exo, 22: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		14: syn, 17: syn, 20: syn, 21: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 4 5 ↑
3 9 10 ↑
4 10 11 ↑
5 13 22 ↑
6 19 20 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 2 6 Watson-Crick/Watson-Crick trans y
2 13 20 Hoogsteen/Bifurcated cis y
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters