Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'15-Hairpin pdb2vhn1B.e2691-2707
Source: [PDB-id:chain] 2vhn:B (&rarr PDB)
Source: Information STRUCTURE OF PDF BINDING HELIX IN COMPLEX WITH THE RIBOSOME. (PART 2 OF 4)
Source: Compound 23S RIBOSOMAL RNA
Source: Resolution 3.74 ANGSTROMS.
Position (2691, 2707)
Primary structure ('_': anchors) _CUGAAAGCAUCUAAG_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		1: C2'-exo, 2: C2'-exo, 4: C2'-exo, 7: C1'-exo, 8: C2'-endo, 10: C2'-exo, 11: C2'-exo, 12: C2'-exo, 13: C2'-endo, 14: C2'-exo, 16: C2'-exo, 17: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		8: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 2 3 ↑
3 3 4 ↑
4 5 6 ↑
5 5 14 →
6 6 7 &larr
7 10 11 ↑
8 15 16 ↑
9 16 17 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 12 Bifurcated/O2' ?
2 1 17 Watson-Crick/Watson-Crick cis
3 2 16 Bifurcated/Watson-Crick cis y
4 4 5 Hoogsteen/Sugar cis y
5 4 14 Watson-Crick/Sugar trans y
6 5 11 Watson-Crick/Hoogsteen trans
7 6 7 O2'/Hoogsteen ?
8 6 10 Watson-Crick/Hoogsteen trans y
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters