Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'17-Hairpin pdb2vhn1B.e1846-1864
Source: [PDB-id:chain] 2vhn:B (&rarr PDB)
Source: Information STRUCTURE OF PDF BINDING HELIX IN COMPLEX WITH THE RIBOSOME. (PART 2 OF 4)
Source: Compound 23S RIBOSOMAL RNA
Source: Resolution 3.74 ANGSTROMS.
Position (1846, 1864)
Primary structure ('_': anchors) _GUUAGCGCAAGCGAAGC_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		4: C2'-endo, 5: C2'-exo, 6: C2'-exo, 8: C2'-exo, 9: C1'-exo, 10: C2'-exo, 14: C2'-exo, 15: C2'-exo, 16: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 2 3 ↑
3 4 14 &larr
4 5 6 ↑
5 5 15 →
6 6 7 ↑
7 7 8 ↑
8 10 11 ↑
9 12 13 ↑
10 13 14 ↑
11 15 16 ↑
12 16 17 ↑
13 17 18 ↑
14 18 19 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 19 Watson-Crick/Watson-Crick cis y
2 4 14 Bifurcated/O2' ?
3 6 13 Watson-Crick/Watson-Crick cis
4 8 10 Bifurcated/O2' ?
5 8 11 O2'/Bifurcated ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters