Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'1-1-Internal Loop pdb2vhn1A.n4-114
Source: [PDB-id:chain] 2vhn:A (&rarr PDB)
Source: Information STRUCTURE OF PDF BINDING HELIX IN COMPLEX WITH THE RIBOSOME. (PART 2 OF 4)
Source: Compound 5S RIBOSOMAL RNA
Source: Resolution 3.74 ANGSTROMS.
Position (2, 116), (4, 114)
Primary structure ('_': anchors) _C_-_G_
Bases with unusual sugar puckers
(Standard: C3'-endo)
4: C4'-exo, 6: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2
2 4 5
3 5 6
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 6 Watson-Crick/Watson-Crick cis
2 2 5 Bifurcated/Watson-Crick cis y
3 3 4 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters