Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'6-4-Internal Loop pdb2vhmFB.n2474-2483
Source: [PDB-id:chain] 2vhm:B (&rarr PDB)
Source: Information STRUCTURE OF PDF BINDING HELIX IN COMPLEX WITH THE RIBOSOME (PART 1 OF 4)
Source: Compound 23S RIBOSOMAL RNA
FLIPPED INTERNAL
Source: Resolution 3.74 ANGSTROMS.
Position (2469, 2490), (2474, 2483)
Primary structure ('_': anchors) _UCCCAA_-_GGGG_
Bases with unusual sugar puckers
(Standard: C3'-endo)
1: C2'-exo, 2: C3'-exo, 3: C2'-exo, 4: C2'-exo, 5: C4'-exo, 11: C1'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
2: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 3 4
2 3 13
3 4 12
4 5 6
5 6 7
6 7 8
7 9 10
8 11 12
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 14 Watson-Crick/Watson-Crick cis
2 4 13 Watson-Crick/Watson-Crick cis
3 5 12 Hoogsteen/Watson-Crick cis y
4 6 11 Watson-Crick/Watson-Crick cis y
5 8 9 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters