Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'5-6-Internal Loop pdb2vhmFB.n2027-2572
Source: [PDB-id:chain] 2vhm:B (&rarr PDB)
Source: Information STRUCTURE OF PDF BINDING HELIX IN COMPLEX WITH THE RIBOSOME (PART 1 OF 4)
Source: Compound 23S RIBOSOMAL RNA
FLIPPED INTERNAL
Source: Resolution 3.74 ANGSTROMS.
Position (2029, 2570), (2036, 2564)
Primary structure ('_': anchors) _GCCGU_-_GCGGCA_
Bases with unusual sugar puckers
(Standard: C3'-endo)
1: C2'-exo, 3: C2'-exo, 4: C4'-exo, 7: C2'-exo, 8: C2'-exo, 9: C3'-exo, 11: C2'-exo, 12: C2'-exo, 13: C2'-exo, 14: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 14
2 2 3
3 5 6
4 6 7
5 10 11
6 11 12
7 13 14
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 15 Watson-Crick/Watson-Crick cis y
2 6 10 Watson-Crick/Watson-Crick cis
3 7 8 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters