Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'26-Segment pdb2vhm1B.i987-1014
Source: [PDB-id:chain] 2vhm:B (&rarr PDB)
Source: Information STRUCTURE OF PDF BINDING HELIX IN COMPLEX WITH THE RIBOSOME (PART 1 OF 4)
Source: Compound 23S RIBOSOMAL RNA
Source: Resolution 3.74 ANGSTROMS.
Position (987, 1014)
Primary structure ('_': anchors) _UCCCAAAGUCAUGGUUAAGUGGGAAA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		1: C2'-exo, 3: C2'-exo, 6: C3'-exo, 7: C2'-exo, 8: C2'-exo, 9: C3'-exo, 10: C2'-endo, 13: C2'-exo, 16: C2'-exo, 18: C1'-exo, 19: C2'-exo, 20: C2'-endo, 21: C4'-exo, 23: C2'-endo, 24: O4'-endo, 26: C2'-exo, 27: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		9: syn, 19: syn, 20: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 5 6 &larr
3 9 11 ↑
4 14 15 ↑
5 15 16 ↑
6 17 18 ↑
7 19 21 ↑
8 21 22 ↑
9 22 23 &larr
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 8 Watson-Crick/O2' trans y
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters