Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'7-Segment pdb2vhm1B.i97-105
Source: [PDB-id:chain] 2vhm:B (&rarr PDB)
Source: Information STRUCTURE OF PDF BINDING HELIX IN COMPLEX WITH THE RIBOSOME (PART 1 OF 4)
Source: Compound 23S RIBOSOMAL RNA
Source: Resolution 3.74 ANGSTROMS.
Position (97, 105)
Primary structure ('_': anchors) _GUUAUAA_
Bases with unusual sugar puckers
(Standard: C3'-endo)
2: C2'-exo, 4: C3'-exo, 6: C3'-exo, 7: C2'-exo, 8: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
3: syn, 5: syn, 6: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2
2 2 3 &larr
3 4 5
4 7 8
5 8 9
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 4 5 C/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters