Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'27-Segment pdb2vhm1B.i844-872
Source: [PDB-id:chain] 2vhm:B (&rarr PDB)
Source: Information STRUCTURE OF PDF BINDING HELIX IN COMPLEX WITH THE RIBOSOME (PART 1 OF 4)
Source: Compound 23S RIBOSOMAL RNA
Source: Resolution 3.74 ANGSTROMS.
Position (844, 872)
Primary structure ('_': anchors) _AUUCAUCUCCGGGGGUAGAGCACUGUU_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		4: C4'-exo, 8: C2'-exo, 13: C2'-exo, 15: C2'-endo, 16: C2'-endo, 19: C2'-exo, 20: C2'-exo, 21: C2'-exo, 22: C1'-exo, 27: C2'-exo, 29: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 4 5 ↑
2 5 6 ↑
3 6 7 ↑
4 8 9 ↑
5 9 10 ↑
6 10 11 ↑
7 12 13 ↑
8 18 19 ↑
9 19 20 ↑
10 20 21 ↑
11 21 22 ↑
12 23 24 ↑
13 24 25 ↑
14 26 27 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 15 16 Sugar/O2' ?
2 16 17 Hoogsteen/Sugar cis y
3 22 24 Hoogsteen/Watson-Crick cis y
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters