Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'4-Hairpin pdb2vhm1B.e1517-1522
Source: [PDB-id:chain] 2vhm:B (&rarr PDB)
Source: Information STRUCTURE OF PDF BINDING HELIX IN COMPLEX WITH THE RIBOSOME (PART 1 OF 4)
Source: Compound 23S RIBOSOMAL RNA
Source: Resolution 3.74 ANGSTROMS.
Position (1517, 1522)
Primary structure ('_': anchors) _UACG_
Bases with unusual sugar puckers
(Standard: C3'-endo)
2: C4'-exo, 3: C1'-exo, 4: C2'-endo, 5: C4'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
3: syn, 4: syn, 5: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 6 Watson-Crick/Watson-Crick cis
2 2 5 Watson-Crick/Bifurcated trans
3 3 5 Hoogsteen/O2' cis y
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters