Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'14-Segment pdb2vhm1A.i96-111
Source: [PDB-id:chain] 2vhm:A (&rarr PDB)
Source: Information STRUCTURE OF PDF BINDING HELIX IN COMPLEX WITH THE RIBOSOME (PART 1 OF 4)
Source: Compound 5S RIBOSOMAL RNA
Source: Resolution 3.74 ANGSTROMS.
Position (96, 111)
Primary structure ('_': anchors) _GAGAGUAGGGAACU_
Bases with unusual sugar puckers
(Standard: C3'-endo)
3: C2'-exo, 4: C2'-exo, 11: O4'-endo, 12: C3'-exo, 16: C4'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
12: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2
2 3 4
3 4 5
4 5 6
5 6 7
6 8 9
7 9 10
8 10 11
9 13 14
Tertiary structure: Base-pairs
(anchor pairs)
None
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters