Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'9-6-Internal Loop pdb2v49FA.n688-807
Source: [PDB-id:chain] 2v49:A (&rarr PDB)
Source: Information STRUCTURE OF THE RIBOSOME RECYCLING FACTOR BOUND TO THE THERMUS THERMOPHILUS 70S RIBOSOME WITH MRNA, ASL-PHE AND TRNA-FMET (PART 4 OF 4). THIS FILE CONTAINS THE 50S SUBUNIT OF MOLECULE 2.
Source: Compound 23S RIBOSOMAL RNA
FLIPPED INTERNAL
Source: Resolution 3.8 ANGSTROMS.
Position (681, 817), (688, 807)
Primary structure ('_': anchors) _GAGAUAGCU_-_CGAAAC_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		4: C2'-endo, 8: C2'-endo, 9: C2'-endo, 15: C4'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		15: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 5 16 →
3 5 17 &larr
4 6 7 ↑
5 7 14 →
6 9 10 &larr
7 10 11 ↑
8 13 14 ↑
9 15 16 &larr
10 18 19 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 19 Watson-Crick/Watson-Crick cis
2 2 18 Watson-Crick/Watson-Crick cis y
3 3 4 Bifurcated/O2' ?
4 3 17 Watson-Crick/Watson-Crick cis
5 6 16 Watson-Crick/Hoogsteen trans
6 8 19 Bifurcated/O2' ?
7 9 13 Watson-Crick/Watson-Crick trans
8 11 12 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters