Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'5-6-Internal Loop pdb2v49FA.n292-374
Source: [PDB-id:chain] 2v49:A (&rarr PDB)
Source: Information STRUCTURE OF THE RIBOSOME RECYCLING FACTOR BOUND TO THE THERMUS THERMOPHILUS 70S RIBOSOME WITH MRNA, ASL-PHE AND TRNA-FMET (PART 4 OF 4). THIS FILE CONTAINS THE 50S SUBUNIT OF MOLECULE 2.
Source: Compound 23S RIBOSOMAL RNA
FLIPPED INTERNAL
Source: Resolution 3.8 ANGSTROMS.
Position (293, 373), (300, 367)
Primary structure ('_': anchors) _GGAUA_-_GAAUCC_
Bases with unusual sugar puckers
(Standard: C3'-endo)
5: C2'-exo, 12: C3'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2
2 2 13
3 3 4
4 4 5
5 5 6
6 6 7
7 11 13
8 14 15
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 15 Watson-Crick/Watson-Crick cis
2 2 14 Bifurcated/O2' trans
3 3 13 Watson-Crick/Hoogsteen trans y
4 5 10 Watson-Crick/Watson-Crick cis y
5 6 9 Watson-Crick/Bifurcated cis y
6 7 8 Watson-Crick/Watson-Crick cis y
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters