Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'20-Segment pdb2v491A.i1087-1108
Source: [PDB-id:chain] 2v49:A (&rarr PDB)
Source: Information STRUCTURE OF THE RIBOSOME RECYCLING FACTOR BOUND TO THE THERMUS THERMOPHILUS 70S RIBOSOME WITH MRNA, ASL-PHE AND TRNA-FMET (PART 4 OF 4). THIS FILE CONTAINS THE 50S SUBUNIT OF MOLECULE 2.
Source: Compound 23S RIBOSOMAL RNA
Source: Resolution 3.8 ANGSTROMS.
Position (1087, 1108)
Primary structure ('_': anchors) _GCUUAAGCCCAGCGCCGAAG_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		4: C2'-endo, 6: C3'-exo, 7: C2'-endo, 20: C2'-endo, 21: C2'-exo, 22: C2'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 2 3 ↑
3 6 8 ↑
4 8 9 ↑
5 12 13 ↑
6 13 14 ↑
7 14 15 ↑
8 15 16 ↑
9 17 18 ↑
10 19 21 ↑
11 21 22 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 2 7 Bifurcated/O2' trans y
2 3 7 C/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters