Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'9-Hairpin pdb2v481W.e13-23
Source: [PDB-id:chain] 2v48:W (&rarr PDB)
Source: Information STRUCTURE OF THE RIBOSOME RECYCLING FACTOR BOUND TO THE THERMUS THERMOPHILUS 70S RIBOSOME WITH MRNA, ASL-PHE AND TRNA-FMET (PART 3 OF 4). THIS FILE CONTAINS THE 30S SUBUNIT, MRNA, P-SITE ASL, E-SITE TRNA AND RRF FOR MOLECULE 2.
Source: Compound TRNA-FMET
Source: Resolution 3.8 ANGSTROMS.
Position (13, 23)
Primary structure ('_': anchors) _AGCCUGGUA_
Bases with unusual sugar puckers
(Standard: C3'-endo)
4: C2'-endo, 7: C2'-endo, 8: C3'-exo, 9: C4'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
5: syn, 9: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 2 3
2 2 11
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 11 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters