Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'5-5-Internal Loop pdb2v481A.n1223-1268
Source: [PDB-id:chain] 2v48:A (&rarr PDB)
Source: Information STRUCTURE OF THE RIBOSOME RECYCLING FACTOR BOUND TO THE THERMUS THERMOPHILUS 70S RIBOSOME WITH MRNA, ASL-PHE AND TRNA-FMET (PART 3 OF 4). THIS FILE CONTAINS THE 30S SUBUNIT, MRNA, P-SITE ASL, E-SITE TRNA AND RRF FOR MOLECULE 2.
Source: Compound 16S RRNA
Source: Resolution 3.8 ANGSTROMS.
Position (1224, 1267), (1230, 1261)
Primary structure ('_': anchors) _ACAAA_-_AAAAA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		3: C2'-exo, 9: C2'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 2 3 ↑
2 2 14 →
3 4 5 ↑
4 4 11 →
5 5 6 ↑
6 6 7 ↑
7 8 9 &larr
8 12 13 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 14 Watson-Crick/Watson-Crick cis y
2 3 12 Hoogsteen/Watson-Crick trans
3 6 9 Watson-Crick/Watson-Crick trans y
4 7 8 Watson-Crick/Watson-Crick cis
5 9 10 Hoogsteen/O2' ?
6 13 14 Hoogsteen/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters