Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'6-7-Internal Loop pdb2v471A.n864-924
Source: [PDB-id:chain] 2v47:A (&rarr PDB)
Source: Information STRUCTURE OF THE RIBOSOME RECYCLING FACTOR BOUND TO THE THERMUS THERMOPHILUS 70S RIBOSOME WITH MRNA, ASL-PHE AND TRNA-FMET (PART 2 OF 4). THIS FILE CONTAINS THE 50S SUBUNIT FOR MOLECULE 1.
Source: Compound 23S RIBOSOMAL RNA
Source: Resolution 3.8 ANGSTROMS.
Position (865, 923), (872, 915)
Primary structure ('_': anchors) _CUGUAG_-_CCGAAGG_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		1: C2'-exo, 3: C2'-endo, 4: C2'-endo, 7: C2'-exo, 9: C2'-endo, 11: C4'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		5: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 6 7 ↑
3 6 13 →
4 7 8 ↑
5 10 11 ↑
6 11 12 ↑
7 13 14 ↑
8 14 15 ↑
9 15 16 ↑
10 16 17 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 17 Watson-Crick/Watson-Crick cis
2 3 15 Watson-Crick/Watson-Crick cis y
3 4 13 O2'/Bifurcated ?
4 5 12 Watson-Crick/O2' ?
5 5 13 Hoogsteen/Hoogsteen trans y
6 6 12 Sugar/Hoogsteen trans
7 7 11 Watson-Crick/Watson-Crick cis
8 8 9 Watson-Crick/Watson-Crick cis
9 9 10 Hoogsteen/Sugar cis y
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters