Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'22-Segment pdb2v471A.i1009-1032
Source: [PDB-id:chain] 2v47:A (&rarr PDB)
Source: Information STRUCTURE OF THE RIBOSOME RECYCLING FACTOR BOUND TO THE THERMUS THERMOPHILUS 70S RIBOSOME WITH MRNA, ASL-PHE AND TRNA-FMET (PART 2 OF 4). THIS FILE CONTAINS THE 50S SUBUNIT FOR MOLECULE 1.
Source: Compound 23S RIBOSOMAL RNA
Source: Resolution 3.8 ANGSTROMS.
Position (1009, 1032)
Primary structure ('_': anchors) _CAAGUCUGGGCUAAGUGGUAAA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		2: C2'-endo, 5: C2'-endo, 6: C2'-endo, 14: C2'-endo, 19: C2'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		5: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 &larr
2 3 4 ↑
3 5 7 ↑
4 9 10 ↑
5 10 11 ↑
6 11 12 ↑
7 12 13 ↑
8 15 17 ↑
9 18 19 &larr
10 22 23 ↑
11 23 24 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 2 3 Hoogsteen/Watson-Crick cis y
2 13 15 Watson-Crick/O2' ?
3 16 17 Hoogsteen/Sugar cis y
4 16 18 Hoogsteen/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters