Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'15-Hairpin pdb2v471A.e2525-2541
Source: [PDB-id:chain] 2v47:A (&rarr PDB)
Source: Information STRUCTURE OF THE RIBOSOME RECYCLING FACTOR BOUND TO THE THERMUS THERMOPHILUS 70S RIBOSOME WITH MRNA, ASL-PHE AND TRNA-FMET (PART 2 OF 4). THIS FILE CONTAINS THE 50S SUBUNIT FOR MOLECULE 1.
Source: Compound 23S RIBOSOMAL RNA
Source: Resolution 3.8 ANGSTROMS.
Position (2525, 2541)
Primary structure ('_': anchors) _UAGUACGAGAGGACC_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		3: C2'-endo, 4: C2'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 2 3 &larr
3 3 5 →
4 6 7 ↑
5 6 14 →
6 7 8 ↑
7 9 10 ↑
8 10 11 ↑
9 11 12 ↑
10 12 13 ↑
11 14 15 ↑
12 15 16 ↑
13 16 17 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 17 Watson-Crick/Watson-Crick cis
2 2 16 Hoogsteen/Watson-Crick cis y
3 3 15 O2'/Bifurcated ?
4 4 13 Watson-Crick/O2' ?
5 5 13 Watson-Crick/O2' ?
6 5 14 Hoogsteen/Watson-Crick trans
7 6 13 Sugar/Hoogsteen trans
8 7 12 Watson-Crick/Watson-Crick cis
9 8 10 Hoogsteen/O2' ?
10 8 11 O2'/Bifurcated trans y
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters