Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'22-Segment pdb2v461A.i690-713
Source: [PDB-id:chain] 2v46:A (&rarr PDB)
Source: Information STRUCTURE OF THE RIBOSOME RECYCLING FACTOR BOUND TO THE THERMUS THERMOPHILUS 70S RIBOSOME WITH MRNA, ASL-PHE AND TRNA-FMET (PART 1 OF 4). THIS FILE CONTAINS THE 30S SUBUNIT, MRNA, P-SITE ASL, E-SITE TRNA AND RRF FOR MOLECULE 1.
Source: Compound 16S RRNA
Source: Resolution 3.8 ANGSTROMS.
Position (690, 713)
Primary structure ('_': anchors) _AGGAACGCCGAUGGCGAAGGCA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		7: C2'-endo, 11: C2'-endo, 23: C2'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		12: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 2 3 ↑
2 3 4 ↑
3 4 5 ↑
4 6 7 ↑
5 10 11 &larr
6 11 23 ↓
7 12 14 →
8 14 15 ↑
9 17 21 →
10 18 19 ↑
11 19 20 ↑
12 21 22 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 8 10 Bifurcated/O2' ?
2 9 10 Bifurcated/O2' ?
3 15 22 Watson-Crick/Watson-Crick cis
4 17 20 Hoogsteen/Sugar trans y
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters