Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'2-5-Internal Loop pdb2v3cFN.n46-90
Source: [PDB-id:chain] 2v3c:N (&rarr PDB)
Source: Information CRYSTAL STRUCTURE OF THE SRP54-SRP19-7S.S SRP RNA COMPLEX OF M. JANNASCHII
Source: Compound 7S RNA
FLIPPED INTERNAL
Source: Resolution 2.5 ANGSTROMS.
Position (51, 85), (57, 82)
Primary structure ('_': anchors) _UA_-_GAACC_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		4: C4'-exo, 9: C4'-exo, 10: C4'-exo, 11: C4'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 2 9 →
3 3 4 ↑
4 5 9 ↑
5 6 7 ↑
6 7 8 ↑
7 10 11 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 9 Bifurcated/O2' ?
2 1 11 Watson-Crick/Watson-Crick cis
3 2 10 Bifurcated/O2' trans
4 3 9 Watson-Crick/Hoogsteen trans y
5 4 5 Watson-Crick/Watson-Crick cis y
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters