Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'5-2-Internal Loop pdb2v3c1N.n46-90
Source: [PDB-id:chain] 2v3c:N (&rarr PDB)
Source: Information CRYSTAL STRUCTURE OF THE SRP54-SRP19-7S.S SRP RNA COMPLEX OF M. JANNASCHII
Source: Compound 7S RNA
Source: Resolution 2.5 ANGSTROMS.
Position (51, 85), (57, 82)
Primary structure ('_': anchors) _GAACC_-_UA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		1: C4'-exo, 2: C4'-exo, 3: C4'-exo, 8: C4'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 3 7 ↑
3 3 10 →
4 4 5 ↑
5 5 6 ↑
6 8 9 ↑
7 10 11 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 11 Watson-Crick/Watson-Crick cis
2 2 10 Bifurcated/O2' trans
3 3 9 Watson-Crick/Hoogsteen trans y
4 3 11 Bifurcated/O2' ?
5 7 8 Watson-Crick/Watson-Crick cis y
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters