Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'5-2-Internal Loop pdb2v3c1M.n47-89
Source: [PDB-id:chain] 2v3c:M (&rarr PDB)
Source: Information CRYSTAL STRUCTURE OF THE SRP54-SRP19-7S.S SRP RNA COMPLEX OF M. JANNASCHII
Source: Compound 7S RNA
Source: Resolution 2.5 ANGSTROMS.
Position (51, 85), (57, 82)
Primary structure ('_': anchors) _GAACC_-_UA_
Bases with unusual sugar puckers
(Standard: C3'-endo)
3: C4'-exo, 4: C1'-endo, 8: C4'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2
2 3 7
3 4 5
4 8 9
5 9 10
6 10 11
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 11 Watson-Crick/Watson-Crick cis y
2 2 10 Bifurcated/O2' trans
3 3 9 Watson-Crick/Hoogsteen trans y
4 7 8 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters