Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'3-3-Internal Loop pdb2uxd1A.n735-761
Source: [PDB-id:chain] 2uxd:A (&rarr PDB)
Source: Information CRYSTAL STRUCTURE OF AN EXTENDED TRNA ANTICODON STEM LOOP IN COMPLEX WITH ITS COGNATE MRNA CGGG IN THE CONTEXT OF THE THERMUS THERMOPHILUS 30S SUBUNIT.
Source: Compound 16S RIBOSOMAL RNA
Source: Resolution 3.2 ANGSTROMS.
Position (736, 760), (740, 756)
Primary structure ('_': anchors) _AAA_-_GUA_
Bases with unusual sugar puckers
(Standard: C3'-endo)
3: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2
2 3 4
3 3 9
4 4 5
5 6 7
6 8 9
7 9 10
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 10 Watson-Crick/Watson-Crick cis
2 2 8 O2'/Bifurcated ?
3 2 9 Hoogsteen/Sugar trans
4 3 7 Watson-Crick/O2' ?
5 3 8 Watson-Crick/Hoogsteen trans
6 4 7 Sugar/Hoogsteen trans
7 5 6 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters