Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'3-Hairpin pdb2uxd1A.e1122-1126
Source: [PDB-id:chain] 2uxd:A (&rarr PDB)
Source: Information CRYSTAL STRUCTURE OF AN EXTENDED TRNA ANTICODON STEM LOOP IN COMPLEX WITH ITS COGNATE MRNA CGGG IN THE CONTEXT OF THE THERMUS THERMOPHILUS 30S SUBUNIT.
Source: Compound 16S RIBOSOMAL RNA
Source: Resolution 3.2 ANGSTROMS.
Position (1122, 1126)
Primary structure ('_': anchors) _GAA_
Bases with unusual sugar puckers
(Standard: C3'-endo)
2: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2
2 2 5
3 3 4
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 5 Watson-Crick/Watson-Crick cis y
2 2 3 Hoogsteen/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters