Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'3-5-Internal Loop pdb2uxbFA.n360-383
Source: [PDB-id:chain] 2uxb:A (&rarr PDB)
Source: Information CRYSTAL STRUCTURE OF AN EXTENDED TRNA ANTICODON STEM LOOP IN COMPLEX WITH ITS COGNATE MRNA GGGU IN THE CONTEXT OF THE THERMUS THERMOPHILUS 30S SUBUNIT.
Source: Compound 16S RIBOSOMAL RNA
FLIPPED INTERNAL
Source: Resolution 3.1 ANGSTROMS.
Position (362, 381), (368, 377)
Primary structure ('_': anchors) _UGA_-_CAAUG_
Bases with unusual sugar puckers
(Standard: C3'-endo)
3: C2'-endo, 11: C2'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2
2 2 7
3 4 5
4 6 7
5 7 8
6 8 9
7 9 10
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 9 O2'/Watson-Crick ?
2 1 12 Watson-Crick/Watson-Crick cis
3 2 8 Watson-Crick/Watson-Crick cis
4 2 11 Hoogsteen/Watson-Crick trans y
5 5 6 Watson-Crick/Watson-Crick cis
6 10 12 Hoogsteen/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters