Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'5-4-Internal Loop pdb2uxbFA.n1382-1470
Source: [PDB-id:chain] 2uxb:A (&rarr PDB)
Source: Information CRYSTAL STRUCTURE OF AN EXTENDED TRNA ANTICODON STEM LOOP IN COMPLEX WITH ITS COGNATE MRNA GGGU IN THE CONTEXT OF THE THERMUS THERMOPHILUS 30S SUBUNIT.
Source: Compound 16S RIBOSOMAL RNA
FLIPPED INTERNAL
Source: Resolution 3.1 ANGSTROMS.
Position (1383, 1469), (1388, 1463)
Primary structure ('_': anchors) _GAAGU_-_UCAC_
Bases with unusual sugar puckers
(Standard: C3'-endo)
4: C4'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
4: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 2 3
2 3 10
3 4 5 &larr
4 6 8
5 11 12
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 13 Watson-Crick/Watson-Crick cis
2 3 11 Watson-Crick/Watson-Crick cis
3 7 8 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters