Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'6-5-Internal Loop pdb2uxbFA.n1028-1185
Source: [PDB-id:chain] 2uxb:A (&rarr PDB)
Source: Information CRYSTAL STRUCTURE OF AN EXTENDED TRNA ANTICODON STEM LOOP IN COMPLEX WITH ITS COGNATE MRNA GGGU IN THE CONTEXT OF THE THERMUS THERMOPHILUS 30S SUBUNIT.
Source: Compound 16S RIBOSOMAL RNA
FLIPPED INTERNAL
Source: Resolution 3.1 ANGSTROMS.
Position (1030, 1183), (1036, 1176)
Primary structure ('_': anchors) _CAGCAU_-_GCAUG_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		6: C2'-endo, 13: C2'-exo, 14: C2'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 12 →
2 3 4 ↑
3 3 10 →
4 4 5 ↑
5 7 15 &larr
6 8 14 &larr
7 9 10 ↑
8 11 12 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 15 Watson-Crick/Watson-Crick cis
2 3 7 Bifurcated/O2' ?
3 3 11 Watson-Crick/Watson-Crick cis
4 7 12 Bifurcated/O2' trans y
5 8 9 Watson-Crick/Watson-Crick cis y
6 10 14 Hoogsteen/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters