Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'5-5-Internal Loop pdb2uxb1A.n1218-1273
Source: [PDB-id:chain] 2uxb:A (&rarr PDB)
Source: Information CRYSTAL STRUCTURE OF AN EXTENDED TRNA ANTICODON STEM LOOP IN COMPLEX WITH ITS COGNATE MRNA GGGU IN THE CONTEXT OF THE THERMUS THERMOPHILUS 30S SUBUNIT.
Source: Compound 16S RIBOSOMAL RNA
Source: Resolution 3.1 ANGSTROMS.
Position (1224, 1267), (1230, 1261)
Primary structure ('_': anchors) _ACAAA_-_AAAAA_
Bases with unusual sugar puckers
(Standard: C3'-endo)
3: C2'-exo, 9: C4'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
3: syn, 10: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 2 14
2 4 5
3 4 11
4 5 6
5 6 7
6 8 9 &larr
7 11 12
8 12 13
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 14 Watson-Crick/Watson-Crick cis
2 6 9 Watson-Crick/Watson-Crick trans y
3 7 8 Watson-Crick/Watson-Crick cis
4 9 10 Watson-Crick/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters