Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'5-5-Internal Loop pdb2uuc1A.n1218-1273
Source: [PDB-id:chain] 2uuc:A (&rarr PDB)
Source: Information STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT COMPLEXED WITH A VALINE-ASL WITH CMO5U IN POSITION 34 BOUND TO AN MRNA WITH A GUA-CODON IN THE A-SITE AND PAROMOMYCIN.
Source: Compound 16S RRNA
Source: Resolution 3.10 ANGSTROMS.
Position (1224, 1267), (1230, 1261)
Primary structure ('_': anchors) _ACAAA_-_AAAAA_
Bases with unusual sugar puckers
(Standard: C3'-endo)
4: C4'-exo, 9: C2'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
10: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 2 3
2 2 14
3 4 5
4 4 11
5 5 6
6 6 7
7 8 9 &larr
8 11 12
9 12 13
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 14 Watson-Crick/Watson-Crick cis
2 2 13 Hoogsteen/Watson-Crick trans y
3 3 12 Hoogsteen/Watson-Crick trans
4 6 9 Watson-Crick/Watson-Crick trans y
5 7 8 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters