Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'16-Hairpin pdb2uuc1A.e486-503
Source: [PDB-id:chain] 2uuc:A (&rarr PDB)
Source: Information STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT COMPLEXED WITH A VALINE-ASL WITH CMO5U IN POSITION 34 BOUND TO AN MRNA WITH A GUA-CODON IN THE A-SITE AND PAROMOMYCIN.
Source: Compound 16S RRNA
Source: Resolution 3.10 ANGSTROMS.
Position (486, 503)
Primary structure ('_': anchors) _CAACUCCGUGCCAGCA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		2: C2'-endo, 5: C2'-endo, 11: C2'-endo, 12: C2'-endo, 13: C4'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 &larr
2 3 4 ↑
3 5 6 ↑
4 8 9 ↑
5 9 10 ↑
6 10 11 ↑
7 13 14 ↑
8 14 15 ↑
9 15 16 ↑
10 16 17 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 18 Watson-Crick/Watson-Crick cis
2 10 13 Watson-Crick/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters