Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'1-1-Internal Loop pdb2uub1A.n1387-1464
Source: [PDB-id:chain] 2uub:A (&rarr PDB)
Source: Information STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT COMPLEXED WITH A VALINE-ASL WITH CMO5U IN POSITION 34 BOUND TO AN MRNA WITH A GUU-CODON IN THE A-SITE AND PAROMOMYCIN.
Source: Compound 16S RRNA
Source: Resolution 2.80 ANGSTROMS.
Position (1390, 1461), (1392, 1459)
Primary structure ('_': anchors) _A_-_G_
Bases with unusual sugar puckers
(Standard: C3'-endo)
None
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2
2 2 3
3 2 6
4 4 5
5 5 6
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 6 Watson-Crick/Watson-Crick cis
2 2 5 Watson-Crick/Watson-Crick cis
3 3 4 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters