Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'1-4-Internal Loop pdb2uu9FA.n1415-1437
Source: [PDB-id:chain] 2uu9:A (&rarr PDB)
Source: Information STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT COMPLEXED WITH A VALINE-ASL WITH CMO5U IN POSITION 34 BOUND TO AN MRNA WITH A GUG-CODON IN THE A-SITE AND PAROMOMYCIN.
Source: Compound 16S RRNA
FLIPPED INTERNAL
Source: Resolution 3.1 ANGSTROMS.
Position (1418, 1434), (1423, 1432)
Primary structure ('_': anchors) _A_-_GGGA_
Bases with unusual sugar puckers
(Standard: C3'-endo)
6: C3'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
5: syn, 6: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2
2 2 4
3 5 7
4 8 9
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 9 Watson-Crick/Watson-Crick cis
2 2 8 Bifurcated/O2' trans
3 3 4 Watson-Crick/Watson-Crick cis
4 4 7 Hoogsteen/Watson-Crick cis y
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters