Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'4-1-Internal Loop pdb2uu91A.n1415-1437
Source: [PDB-id:chain] 2uu9:A (&rarr PDB)
Source: Information STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT COMPLEXED WITH A VALINE-ASL WITH CMO5U IN POSITION 34 BOUND TO AN MRNA WITH A GUG-CODON IN THE A-SITE AND PAROMOMYCIN.
Source: Compound 16S RRNA
Source: Resolution 3.1 ANGSTROMS.
Position (1418, 1434), (1423, 1432)
Primary structure ('_': anchors) _GGGA_-_A_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		4: C3'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		4: syn, 5: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 3 5 →
3 6 8 →
4 8 9 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 9 Watson-Crick/Watson-Crick cis
2 2 8 Bifurcated/O2' trans
3 3 6 Hoogsteen/Watson-Crick cis y
4 6 7 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters