Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'2-3-Internal Loop pdb2rkjFC.n83-100
Source: [PDB-id:chain] 2rkj:C (&rarr PDB)
Source: Information COCRYSTAL STRUCTURE OF A TYROSYL-TRNA SYNTHETASE SPLICING FACTOR WITH A GROUP I INTRON RNA
Source: Compound RNA (238-MER)
FLIPPED INTERNAL
Source: Resolution 4.50 ANGSTROMS.
Position (79, 103), (83, 100)
Primary structure ('_': anchors) _AA_-_AAG_
Bases with unusual sugar puckers
(Standard: C3'-endo)
2: C4'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
2: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2
2 2 3 &larr
3 3 4
4 5 6
5 6 7
6 7 8
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 9 Watson-Crick/Watson-Crick cis
2 3 6 Watson-Crick/Watson-Crick cis
3 4 5 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters