Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'4-Segment pdb2rkj1O.i46-51
Source: [PDB-id:chain] 2rkj:O (&rarr PDB)
Source: Information COCRYSTAL STRUCTURE OF A TYROSYL-TRNA SYNTHETASE SPLICING FACTOR WITH A GROUP I INTRON RNA
Source: Compound RNA (238-MER)
Source: Resolution 4.50 ANGSTROMS.
Position (46, 51)
Primary structure ('_': anchors) _AACA_
Bases with unusual sugar puckers
(Standard: C3'-endo)
4: C4'-exo, 5: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
5: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 4 5 Watson-Crick/O2' ?
2 4 6 Watson-Crick/Watson-Crick trans y
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters