Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'4-Hairpin pdb2rkj1O.e89-94
Source: [PDB-id:chain] 2rkj:O (&rarr PDB)
Source: Information COCRYSTAL STRUCTURE OF A TYROSYL-TRNA SYNTHETASE SPLICING FACTOR WITH A GROUP I INTRON RNA
Source: Compound RNA (238-MER)
Source: Resolution 4.50 ANGSTROMS.
Position (89, 94)
Primary structure ('_': anchors) _GAAA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		1: C4'-exo, 6: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 3 4 ↑
3 4 5 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 6 Watson-Crick/Watson-Crick cis
2 2 4 O2'/Sugar ?
3 2 5 O2'/Bifurcated ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters