Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'9-Hairpin pdb2rkj1O.e213-223
Source: [PDB-id:chain] 2rkj:O (&rarr PDB)
Source: Information COCRYSTAL STRUCTURE OF A TYROSYL-TRNA SYNTHETASE SPLICING FACTOR WITH A GROUP I INTRON RNA
Source: Compound RNA (238-MER)
Source: Resolution 4.50 ANGSTROMS.
Position (213, 223)
Primary structure ('_': anchors) _AGUAACGAA_
Bases with unusual sugar puckers
(Standard: C3'-endo)
None
Bases with unusual glycosidic-bond configuration
(Standard: anti)
6: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2
2 2 3
3 3 4
4 7 8
5 8 9
6 9 10
7 10 11
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 11 Watson-Crick/Watson-Crick cis
2 2 10 Watson-Crick/Watson-Crick cis
3 4 6 O2'/Hoogsteen trans y
4 4 7 O2'/Watson-Crick ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters